Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu2511HTH deoR-type domain-containing protein; Unnamed protein product; Highly similar to hypothetical transcriptional regulator YgbI of Escherichia coli. (255 aa)    
Predicted Functional Partners:
plu2510
AP_endonuc_2 domain-containing protein; Unnamed protein product; Similar to unknown protein YgbM of Escherichia coli; Belongs to the hyi family.
 
   
 0.830
fruA
PTS system, fructose-specific IIBC component.
 
  
 0.790
plu2509
Aldolase_II domain-containing protein; Unnamed protein product; Similar to hypothetical aldolase class II protein YgbL of Escherichia coli.
     
 0.790
fruK
1-phosphofructokinase (fructose 1-phosphate kinase); Belongs to the carbohydrate kinase PfkB family.
 
  
 0.720
fucR
L-fucose operon activator.
  
     0.695
plu2513
Unnamed protein product; Highly similar to gluconate permease (GntP). Putative transmembrane protein.
 
     0.552
glpD
Aerobic glycerol-3-phosphate dehydrogenase GlpD; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.526
ppnK
Probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
   
 
  0.505
nudC
NADH pyrophosphatase.
     
  0.500
plu2512
Epimerase domain-containing protein; Unnamed protein product; Similar to unknown protein and to probable UDP glucose 4-epimerase.
       0.480
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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