Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plu2512Epimerase domain-containing protein; Unnamed protein product; Similar to unknown protein and to probable UDP glucose 4-epimerase. (321 aa)    
Predicted Functional Partners:
plu2513
Unnamed protein product; Highly similar to gluconate permease (GntP). Putative transmembrane protein.
  
    0.840
plu2509
Aldolase_II domain-containing protein; Unnamed protein product; Similar to hypothetical aldolase class II protein YgbL of Escherichia coli.
 
 
 0.799
plu2510
AP_endonuc_2 domain-containing protein; Unnamed protein product; Similar to unknown protein YgbM of Escherichia coli; Belongs to the hyi family.
 
    0.753
plu2508
Unnamed protein product; Similar to unknown protein YgbK of Escherichia coli.
 
    0.699
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 
 0.635
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.622
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.584
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.577
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.572
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.571
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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