Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2523GPW_gp25 domain-containing protein; Unnamed protein product; Similar to base plate protein gp25 of Bacteriophage. (138 aa)    
Predicted Functional Partners:
plu2528
Unnamed protein product; Similar to unknown protein.
 
   0.965
plu2527
Unnamed protein product; Similar to unknown protein.
 
   0.953
plu2524
Unnamed protein product; Similar to unknown protein and some similarities with VgrG protein.
 
    0.950
plu2525
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
 
   0.948
plu2529
Unnamed protein product; Similar to unknown protein.
 
   0.944
plu2530
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with phage-related contractile tail sheath protein.
 
   0.944
plu2521
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown protein.
 
   0.917
plu2531
Unnamed protein product; Similar to unknown protein.
 
   0.901
plu2386
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with phage-related contractile tail sheath protein.
 
 
 0.856
plu2388
Phage_sheath_1C domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
 
 0.855
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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