plu2536 protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

plu2536

HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family. (96 aa)

Predicted Functional Partners:

plu2537

0.955

plu3981

0.812

plu2099

0.803

plu2098

0.683

plu2538

0.486

plu2539

0.486

plu2779

0.436

plu3994

0.409

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
plu2098	plu2099	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative DNA-binding protein.	Unnamed protein product; Similar to unknown protein.	0.943
plu2098	plu2536	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative DNA-binding protein.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	0.683
plu2098	plu2537	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative DNA-binding protein.	Unnamed protein product; Similar to unknown protein.	0.749
plu2098	plu2779	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative DNA-binding protein.	UPF0339 protein plu2779; Unnamed protein product; Similar to unknown protein YegP of Escherichia coli; Belongs to the UPF0339 family. Duplicated subfamily.	0.416
plu2098	plu3981	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative DNA-binding protein.	Unnamed protein product; Similar to unknown protein.	0.746
plu2099	plu2098	Unnamed protein product; Similar to unknown protein.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative DNA-binding protein.	0.943
plu2099	plu2536	Unnamed protein product; Similar to unknown protein.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	0.803
plu2536	plu2098	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative DNA-binding protein.	0.683
plu2536	plu2099	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	Unnamed protein product; Similar to unknown protein.	0.803
plu2536	plu2537	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	Unnamed protein product; Similar to unknown protein.	0.955
plu2536	plu2538	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	Unnamed protein product; Hypothetical gene.	0.486
plu2536	plu2539	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	Unnamed protein product; Similar to unknown protein of Photorhabdus.	0.486
plu2536	plu2779	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	UPF0339 protein plu2779; Unnamed protein product; Similar to unknown protein YegP of Escherichia coli; Belongs to the UPF0339 family. Duplicated subfamily.	0.436
plu2536	plu3981	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	Unnamed protein product; Similar to unknown protein.	0.812
plu2536	plu3994	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	Unnamed protein product; Similar to putative membrane protein YqjD of Escherichia coli.	0.409
plu2537	plu2098	Unnamed protein product; Similar to unknown protein.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative DNA-binding protein.	0.749
plu2537	plu2536	Unnamed protein product; Similar to unknown protein.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	0.955
plu2537	plu2538	Unnamed protein product; Similar to unknown protein.	Unnamed protein product; Hypothetical gene.	0.486
plu2537	plu2539	Unnamed protein product; Similar to unknown protein.	Unnamed protein product; Similar to unknown protein of Photorhabdus.	0.486
plu2538	plu2536	Unnamed protein product; Hypothetical gene.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.	0.486

page 1 of 2

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About