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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISPlu7D_orfATransposase, IS5 ssgr, IS427 family. (148 aa)    
Predicted Functional Partners:
ISPlu7D_orfB
Transposase, IS5 ssgr, IS427 family.
 
     0.938
ISPlu7C_orfB
Transposase, IS5 ssgr, IS427 family.
 
     0.777
ISPlu7B_orf
Transposase, IS5 ssgr, IS427 family.
 
     0.777
ISPlu7A_orfB
Highly similar to the N-terminal region of unknown protein.
 
     0.777
plu2542
Unnamed protein product; Hypothetical gene.
       0.620
plu2543
Unnamed protein product; Hypothetical protein.
       0.438
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.