close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2548HTH lysR-type domain-containing protein; Unnamed protein product; Some similarities with transcription regulator LysR family; Belongs to the LysR transcriptional regulatory family. (287 aa)    
Predicted Functional Partners:
pssR
Possible regulatory protein PssR; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
   
 0.584
plu1817
HTH luxR-type domain-containing protein; Unnamed protein product; Similar to colanic acid capsular biosynthesis activation protein A (polysaccharide synthesis regulation protein) RcsA of Escherichia coli.
  
    0.548
plu1234
GP-PDE domain-containing protein; Unnamed protein product; Similar to putative exported protein.
  
     0.541
rpmE
50S ribosomal protein L31.
   
  
 0.527
plu0948
HTH marR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator.
   
  
 0.527
rpmE-2
50S ribosomal protein L31; Binds the 23S rRNA.
   
  
 0.527
plu0918
HTH luxR-type domain-containing protein; Unnamed protein product; Weakly similar to transcriptional regulator, LuxR family.
      
 0.526
plu0919
HTH luxR-type domain-containing protein; Unnamed protein product; Weakly similar to transcriptional regulator, LuxR family.
      
 0.526
plu0947
ABM domain-containing protein; Unnamed protein product; Similar to unknown protein.
      
 0.526
cysB
Cys regulon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
      
 0.526
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.