Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2582Unnamed protein product; Highly similar to unknown protein YcjX of Escherichia coli (putative EC 2.1 enzyme). (465 aa)    
Predicted Functional Partners:
plu2581
Unnamed protein product; Highly similar to membrane protein YcjF of Escherichia coli.
 
  
 0.996
pspB
Phage shock protein B.
 
   
 0.776
pspC
Phage shock protein C.
     
 0.746
pspA
Phage shock protein A.
     
 0.681
tyrR
Transcriptional regulatory protein TyrR.
  
  
 0.659
plu1195
YkuD domain-containing protein; Unnamed protein product; Similar to putative exported protein YafK of Escherichia coli.
  
     0.504
pspF
Psp operon transcriptional activator PspF.
       0.484
plu1748
Uncharacterized protein; Truncated gene. Similar to C-terminal part of putative amidase YcbB precursor of Escherichia coli.
  
     0.446
plu0491
Unnamed protein product; Highly similar to unknown protein YjaG of Escherichia coli.
  
     0.416
pldB
Lysophospholipase L2 (Lecithinase B).
  
     0.409
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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