close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspBPhage shock protein B. (72 aa)    
Predicted Functional Partners:
pspC
Phage shock protein C.
 
 
 0.998
pspA
Phage shock protein A.
 
 
 0.994
arcB
Aerobic respiration control sensor protein.
  
 
 
 0.898
plu4313
Unnamed protein product; Similar to unknown protein.
 
 
 0.869
barA
Sensor protein BarA.
    
 
 0.799
bvgS
Virulence sensor protein BvgS precursor.
    
 
 0.796
plu3094
UPF0208 membrane protein plu3094; Unnamed protein product; Similar to unknown protein YfbV of Escherichia coli.
  
     0.727
plu2871
UPF0352 protein plu2871; Unnamed protein product; Highly similar to unknown protein YejL of Escherichia coli; Belongs to the UPF0352 family.
  
     0.713
syd
Syd protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.702
plu2582
Unnamed protein product; Highly similar to unknown protein YcjX of Escherichia coli (putative EC 2.1 enzyme).
 
   
 0.702
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.