Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pspAPhage shock protein A. (224 aa)    
Predicted Functional Partners:
pspC
Phage shock protein C.
 
 
 0.999
pspB
Phage shock protein B.
 
 
 0.998
arcB
Aerobic respiration control sensor protein.
    
 
 0.900
pspF
Psp operon transcriptional activator PspF.
 
 
 
 0.820
plu4314
Unnamed protein product; Some similarities with unknown protein.
 
  
 0.770
bvgS
Virulence sensor protein BvgS precursor.
    
 
 0.697
plu2582
Unnamed protein product; Highly similar to unknown protein YcjX of Escherichia coli (putative EC 2.1 enzyme).
     
 0.681
barA
Sensor protein BarA.
    
 
 0.671
plu2581
Unnamed protein product; Highly similar to membrane protein YcjF of Escherichia coli.
     
 0.670
sapA
Peptide transport periplasmic protein SapA precursor.
 
     0.437
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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