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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspAPhage shock protein A. (224 aa)    
Predicted Functional Partners:
pspC
Phage shock protein C.
 
 
 0.996
pspB
Phage shock protein B.
 
 
 0.994
arcB
Aerobic respiration control sensor protein.
    
 
 0.875
pspF
Psp operon transcriptional activator PspF.
 
 
 
 0.781
bvgS
Virulence sensor protein BvgS precursor.
    
 
 0.766
barA
Sensor protein BarA.
    
 
 0.750
plu4314
Unnamed protein product; Some similarities with unknown protein.
 
  
 0.750
plu2581
Unnamed protein product; Highly similar to membrane protein YcjF of Escherichia coli.
     
 0.598
plu2582
Unnamed protein product; Highly similar to unknown protein YcjX of Escherichia coli (putative EC 2.1 enzyme).
     
 0.588
sapA
Peptide transport periplasmic protein SapA precursor.
 
     0.427
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.