Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
sapAPeptide transport periplasmic protein SapA precursor. (554 aa)    
Predicted Functional Partners:
sapC
Peptide transport system permease protein SapC.
 
 
 0.988
sapB
Peptide transport system permease protein SapB.
 
  
 0.987
dppB
Dipeptide transport system permease protein DppB.
 
 
 0.930
dppC
Dipeptide transport system permease protein DppC.
 
 
 0.929
mppA
Periplasmic murein peptide-binding protein precursor.
 
 
0.920
oppB
Oligopeptide transport system permease protein OppB.
 
 
 0.848
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
  
 0.845
oppC
Oligopeptide transport system permease protein OppC.
 
 
 0.813
dppF
Dipeptide transport ATP-binding protein dppF; Belongs to the ABC transporter superfamily.
 
 
 0.812
dppD
Dipeptide transport ATP-binding protein dppD; Belongs to the ABC transporter superfamily.
 
 
 0.792
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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