Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
sapCPeptide transport system permease protein SapC. (296 aa)    
Predicted Functional Partners:
sapF
Peptide transport system ATP-binding protein SapF.
 
 0.996
sapB
Peptide transport system permease protein SapB.
 
 
 0.994
sapA
Peptide transport periplasmic protein SapA precursor.
 
 
 0.988
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
  
 0.955
mppA
Periplasmic murein peptide-binding protein precursor.
  
  
 0.940
dppD
Dipeptide transport ATP-binding protein dppD; Belongs to the ABC transporter superfamily.
     0.892
oppD
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
     0.874
dppF
Dipeptide transport ATP-binding protein dppF; Belongs to the ABC transporter superfamily.
     0.854
dppA
Periplasmic dipeptide transport protein precursor DppA.
 
  
 0.825
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
     0.813
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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