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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapDPeptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily. (330 aa)    
Predicted Functional Partners:
sapB
Peptide transport system permease protein SapB.
 
 
 0.986
dppC
Dipeptide transport system permease protein DppC.
 
   
 0.974
oppC
Oligopeptide transport system permease protein OppC.
 
   
 0.943
sapC
Peptide transport system permease protein SapC.
  
 0.915
artP
Arginine transport ATP-binding protein ArtP.
 
    
0.859
afuC
ABC transporter ATP-binding protein AfuC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
   
0.849
gltL
Glutamate/aspartate transport ATP-binding protein GltL.
 
     
0.848
pstB
Phosphate transport system permease protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.787
dppB
Dipeptide transport system permease protein DppB.
 
   
 0.778
sapF
Peptide transport system ATP-binding protein SapF.
 
  
0.769
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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