Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sapFPeptide transport system ATP-binding protein SapF. (269 aa)    
Predicted Functional Partners:
sapC
Peptide transport system permease protein SapC.
 
 0.996
sapB
Peptide transport system permease protein SapB.
 
  
 0.901
oppC
Oligopeptide transport system permease protein OppC.
 
     0.877
dppC
Dipeptide transport system permease protein DppC.
 
     0.874
sapA
Peptide transport periplasmic protein SapA precursor.
 
   
 0.788
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
  
0.783
dppB
Dipeptide transport system permease protein DppB.
 
     0.775
oppB
Oligopeptide transport system permease protein OppB.
 
     0.737
dppA
Periplasmic dipeptide transport protein precursor DppA.
 
   
 0.535
plu1467
Unnamed protein product; Some similarities with ABC-type transport proteins.
  
     0.495
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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