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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapFPeptide transport system ATP-binding protein SapF. (269 aa)    
Predicted Functional Partners:
sapC
Peptide transport system permease protein SapC.
 
 0.993
oppC
Oligopeptide transport system permease protein OppC.
 
     0.877
dppC
Dipeptide transport system permease protein DppC.
 
     0.874
sapB
Peptide transport system permease protein SapB.
  
 0.842
dppB
Dipeptide transport system permease protein DppB.
     0.771
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
  
0.769
oppB
Oligopeptide transport system permease protein OppB.
     0.732
sapA
Peptide transport periplasmic protein SapA precursor.
 
  
 0.662
dppA
Periplasmic dipeptide transport protein precursor DppA.
 
  
 0.507
plu1467
Unnamed protein product; Some similarities with ABC-type transport proteins.
  
     0.495
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.