Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
slyBOuter membrane lipoprotein SlyB precursor. (156 aa)    
Predicted Functional Partners:
yaeT
Probable outer membrane protein precursor YaeT; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.
    
 
 0.607
pdxH
Pyridoxamine 5'-phosphate oxidase (PNP/PMP oxidase) (PNPOX); Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.515
ihfA
Integration host factor alpha chain (IHF-alpha); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
    0.486
plu4061
UPF0307 protein plu4061; Unnamed protein product; Highly similar to unknown protein YjgA of Escherichia coli; Belongs to the UPF0307 family.
  
     0.482
plu0491
Unnamed protein product; Highly similar to unknown protein YjaG of Escherichia coli.
  
     0.472
plu3994
Unnamed protein product; Similar to putative membrane protein YqjD of Escherichia coli.
  
  
 0.465
fliJ
Flagellar protein FliJ; Flagellar protein that affects chemotactic events. Belongs to the FliJ family.
  
     0.454
rfaF
ADP-heptose--LPS heptosyltransferase II.
  
     0.447
smpA
Small protein A precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.417
ptsH
Phosphocarrier protein HPr (Histidine-containing protein).
   
    0.411
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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