Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu2606HTH lysR-type domain-containing protein; Unnamed protein product; Highly similar to LysR-family transcriptional regulatory YdhB of Escherichia coli. (302 aa)    
Predicted Functional Partners:
plu2607
Bcr/CflA family efflux transporter; Unnamed protein product; Similar to hypothetical transport protein YdhC precursor of Escherichia coli.
 
     0.623
pssR
Possible regulatory protein PssR; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.576
plu1463
Collar domain-containing protein; Unnamed protein product; Weakly similar to DNA inversion product, tail fiber protein homolog from lambdoid prophage.
      
 0.540
lysR
Transcriptional activator protein LysR; Belongs to the LysR transcriptional regulatory family.
  
     0.528
uspB
Universal stress protein B.
  
     0.438
plu3936
HTH lysR-type domain-containing protein; Unnamed protein product; Similar to LysR-family transcription regulators; Belongs to the LysR transcriptional regulatory family.
  
     0.425
abgR
Putative transcriptional regulator AbgR; Belongs to the LysR transcriptional regulatory family.
  
     0.411
plu2855
HTH lysR-type domain-containing protein; Unnamed protein product; Highly similar to putative transcriptional regulator LysR-type YeiE of Escherichia coli; Belongs to the LysR transcriptional regulatory family.
  
   
 0.407
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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