Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plu2644Formyl_trans_N domain-containing protein; Unnamed protein product; Similar to peptide synthetase. (599 aa)    
Predicted Functional Partners:
plu1211
Carrier domain-containing protein; Unnamed protein product; Some similarities with lichenysin synthetase B, tyrocidine synthetase III, bacitracin synthetases and to other proteins involved in antibiotic synthesis.
 
    0.870
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
  
 0.687
plu1878
Carrier domain-containing protein; Unnamed protein product; Similar to antibiotic synthetase.
  
 0.648
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
  
 0.646
plu2642
Carrier domain-containing protein; Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
  
 0.643
rsmB
RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.593
nusB
N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
  
 0.534
plu2643
Unnamed protein product; Similar to probable MFS transporter.
       0.527
plu1041
Unnamed protein product; Weakly similar to serine/threonine phosphoprotein phosphatase.
  
   0.518
dltA
D-alanine-activating enzyme (DAE) (D-alanine-D-alanyl carrier protein ligase) (DCL).
 
    0.474
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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