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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2648Unnamed protein product; Highly similar to ATP-binding component of ABC transporter. (203 aa)    
Predicted Functional Partners:
plu2647
Unnamed protein product; Highly similar to permease of ABC transporter.
 
 0.984
plu2736
Unnamed protein product; Similar to ABC transporter (permease subunit).
 
 0.931
plu2645
Unnamed protein product; Similar to Membrane Fusion Protein (MFP) of ABC transport system.
 
 
 0.845
plu2646
Unnamed protein product; Similar to Outer Membrane Factor (OMF) of ABC transport system.
   
 
 0.822
plu1467
Unnamed protein product; Some similarities with ABC-type transport proteins.
 
   
 0.760
plu2469
ABC transporter domain-containing protein; Unnamed protein product; Similar to N-terminal region of ATP-binding component of ABC transporter.
 
   
 0.756
btuD
Vitamin B12 transport ATP-binding protein BtuD (Vitamin B12-transporting ATPase); Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system.
  
     0.716
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
    
0.712
plu0571
Unnamed protein product; Similar to putative AAA-family ATPase gene.
  
     0.700
lolE
Lipoprotein releasing system transmembrane protein lolE.
  
 
 0.668
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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