STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btuDVitamin B12 transport ATP-binding protein BtuD (Vitamin B12-transporting ATPase); Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system. (258 aa)    
Predicted Functional Partners:
btuC
Vitamin B12 transport system permease protein BtuC; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Involved in the translocation of the substrate across the membrane.
 
 
 0.996
btuF
Vitamin B12 transport protein BtuF precursor; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Binds vitamin B12 and delivers it to the periplasmic surface of BtuC.
  
 
 0.931
plu0554
Unnamed protein product; Similar to ABC transporter, ATP-binding protein.
  
     0.733
plu2735
Unnamed protein product; Similar to ABC transporter (ATP-binding protein subunit).
  
     0.728
plu2648
Unnamed protein product; Highly similar to ATP-binding component of ABC transporter.
  
     0.716
pheS
phenylalanyl-tRNA synthetase alpha chain (phenylalanine--tRNA ligase alpha chain); Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
     0.705
plu1467
Unnamed protein product; Some similarities with ABC-type transport proteins.
  
     0.671
pheT
phenylalanyl-tRNA synthetase beta chain (phenylalanine--tRNA ligase beta chain); Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.664
plu2469
ABC transporter domain-containing protein; Unnamed protein product; Similar to N-terminal region of ATP-binding component of ABC transporter.
  
     0.658
ihfA
Integration host factor alpha chain (IHF-alpha); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.652
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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