STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfeBIron transport system ATP-binding protein YfeB. (298 aa)    
Predicted Functional Partners:
yfeC
Chelated iron transport system membrane protein YfeC.
 
 0.999
yfeA
Iron (chelated) ABC transporter, periplasmic-binding protein YfeA; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.997
yfeD
Chelated iron transport system membrane protein yfeD homolog.
 
 0.993
znuB
High-affinity zinc uptake system membrane protein ZnuB.
 
 
 0.882
znuA
High affinity zinc uptake system precursor protein ZnuA.
 
  
 0.844
zur
Zinc uptake regulation protein (Zinc uptake regulator); Belongs to the Fur family.
  
  
 0.492
fur
Ferric uptake transcription regulator (ferric uptake regulator); Belongs to the Fur family.
  
  
 0.442
birA
Bifunctional protein [Includes: biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.400
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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