Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2679Unnamed protein product; Similar to probable membrane protein YdjM precursor of Escherichia coli. (182 aa)    
Predicted Functional Partners:
rof
Rof protein.
  
     0.679
plu0245
Unnamed protein product; Similar to putative exported protein YicH of Escherichia coli.
 
     0.611
plu2677
Unnamed protein product; Similar to probable membrane protein YniB of Escherichia coli.
 
     0.603
plu2680
Unnamed protein product; Highly similar to proton/sodium-glutamate symport protein (Glutamate-aspartate carrier protein) YdjN of Escherichia coli; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
     
 0.592
plu1752
Unnamed protein product; Highly similar to outer membrane protein N precursor (Porin OmpN); Belongs to the Gram-negative porin family.
  
     0.555
asmA
Protein AsmA precursor.
 
     0.516
plu2088
Unnamed protein product; Similar to putative lipoprotein YceB of Escherichia coli.
  
     0.494
ompN
Outer membrane protein N precursor (Porin OmpN).
  
     0.487
rcsD
Phosphotransferase RcsD; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
  
     0.483
smp
Protein Smp precursor.
 
     0.481
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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