Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plu2687CopD domain-containing protein; Unnamed protein product; Similar to probable membrane protein YebZ of Escherichia coli. (297 aa)    
Predicted Functional Partners:
plu2688
CopC domain-containing protein; Unnamed protein product; Similar to unknown protein YobA precursor of Escherichia coli.
 
  
 0.954
plu2686
Unnamed protein product; Similar to unknown protein YebY precursor of Escherichia coli.
 
  
 0.876
plu0305
GAPES3 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YhjK of Escherichia coli.
  
     0.740
plu4107
Unnamed protein product; Similar to unknown protein YhhN of Escherichia coli.
  
     0.705
plu2865
Unnamed protein product; Similar to unknown protein yejG of Escherichia coli.
  
     0.701
plu4699
Unnamed protein product; Similar to unknown protein YhdL of Escherichia coli.
  
     0.692
plu2029
Unnamed protein product; Similar to unknown protein YecF of Escherichia coli.
  
     0.687
wzzE
Lipopolysaccharide biosynthesis protein WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.673
plu2481
OMP_b-brl domain-containing protein; Unnamed protein product; Similar to Ail protein precursor of Yersinia (OmpX).
  
     0.671
plu4502
DUF1471 domain-containing protein; Unnamed protein product; Similar to unknown protein YbiJ precursor of Escherichia coli.
  
     0.661
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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