Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plu2700Unnamed protein product; Similar to probable membrane protein YobD of Escherichia coli. (152 aa)    
Predicted Functional Partners:
manY
PTS system, mannose-specific IIC component (EIIC-MAN) (Mannose-permease IIC component) (Phosphotransferase enzyme II, C component) (EII-P-MAN).
 
    0.841
manZ
PTS system, mannose-specific IID component (EIID-MAN) (Mannose-permease IID component) (Phosphotransferase enzyme II, D component) (EII-M-MAN).
 
    0.829
manX
PTS system, mannose-specific IIAB component (EIIAB-MAN) (Mannose-permease IIAB component) (Phosphotransferase enzyme II, AB component) (EIII-MAN).
 
    0.808
ampE
Signaling protein AmpE; Some high similarities with unknown protein of Photorhabdus.
  
     0.756
flgM
Negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM.
  
     0.750
plu2724
UPF0370 protein plu2724; Unnamed protein product; Highly similar to putative membrane protein.
  
     0.743
plu2865
Unnamed protein product; Similar to unknown protein yejG of Escherichia coli.
  
     0.742
plu2232
UPF0482 protein plu2232; Unnamed protein product; Similar to unknown protein YnfB precursor of Escherichia coli; Belongs to the UPF0482 family.
  
     0.728
plu2479
Unnamed protein product; Similar to putative membrane protein YciC of Escherichia coli.
  
     0.726
plu4770
Unnamed protein product; Similar to putative membrane protein YiiR of Escherichia coli.
  
     0.726
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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