Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2704SIR2_2 domain-containing protein; Unnamed protein product; Some similarities in N-terminal with unknown protein. (1292 aa)    
Predicted Functional Partners:
nadR
Transcriptional regulator NadR.
   
    0.883
plu3523
Unnamed protein product; Some similarities with unknown protein.
   
   0.692
plu2353
Hist_deacetyl domain-containing protein; Unnamed protein product; Highly similar to probable acetylpolyamine aminohydrolase.
    
 0.577
pta
Phosphate acetyltransferase (phosphotransacetylase); Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.565
gdhA
NADP-specific glutamate dehydrogenase (NADP-GDH); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.499
hpaA
Regulator of the 4HPA-hydroxylase operon.
  
    0.474
plu1810
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to transcription regulator.
  
    0.474
plu2703
Unnamed protein product; Hypothetical gene.
       0.459
plu1777
Unnamed protein product; Similar to probable membrane protein YccR of Escherichia coli.
    
   0.453
plu2825
HIT domain-containing protein; Unnamed protein product; Highly similar to histidine triad-like protein YcfF of Escherichia coli.
    
  0.424
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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