Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2723VanY domain-containing protein; Unnamed protein product; Similar to D,D-carboxypeptidase-related protein. (225 aa)    
Predicted Functional Partners:
plu1203
Unnamed protein product; Highly similar to putative exported protein.
  
     0.599
plu1374
TPR_REGION domain-containing protein; Unnamed protein product; Weakly similar to putative fimbrial biogenesis and twitching motility protein. Putative transmembrane secreted protein.
 
     0.510
deoD
Purine-nucleoside phosphorylase (inosine phosphorylase) (PNP).
  
    0.463
plu3647
Unnamed protein product; Similar to unknown protein.
  
     0.461
plu3094
UPF0208 membrane protein plu3094; Unnamed protein product; Similar to unknown protein YfbV of Escherichia coli.
 
     0.440
plu0585
Unnamed protein product; Similar to beta-glucoside permease IIABC component (phosphotransferase enzyme II, ABC component). Putative transmembrane protein.
       0.416
pta
Phosphate acetyltransferase (phosphotransacetylase); Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
       0.401
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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