Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu2773IU_nuc_hydro domain-containing protein; Unnamed protein product; Similar to nucleoside hydrolase. (309 aa)    
Predicted Functional Partners:
plu2772
A_deaminase domain-containing protein; Unnamed protein product; Similar to adenosine deaminase.
  
  
 0.781
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.747
plu4883
PfkB domain-containing protein; Unnamed protein product; Similar to sugar kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.511
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.502
plu4352
PfkB domain-containing protein; Unnamed protein product; Similar to putative kinase YeiC protein of Escherichia coli.
 
  
 0.442
plu2771
HTH crp-type domain-containing protein; Unnamed protein product; Similar to transcription regulator, crp family, YeiL of Escherichia coli.
  
    0.400
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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