Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu2787HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to AraC-family transcriptional regulatory protein. (129 aa)    
Predicted Functional Partners:
plu1810
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to transcription regulator.
  
   0.773
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.691
plu1330
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to AraC-family transcriptional regulator.
  
   0.650
slyA
Transcriptional regulator protein SlyA; Transcription regulator that can specifically activate or repress expression of target genes. Regulates the cpm operon, which contains cpmA, cpmB, cpmC, cpmD, cpmE, cpmF, cpmG and cpmH, involved in carbapenem-like antibiotic production; Belongs to the SlyA family.
  
  
 0.616
plu2315
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Some similarities in the C-terminal part with transcription regulators.
  
   
 0.509
plu0410
HTH lysR-type domain-containing protein; Unnamed protein product; Weakly similar to putative LysR-family trancsriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.443
hpaA
Regulator of the 4HPA-hydroxylase operon.
  
   0.420
plu4297
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to AraC family transcriptional regulator.
  
   0.406
plu2786
Unnamed protein product; Similar to unknown protein YobG of Escherichia coli.
       0.404
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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