Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2809JmjC domain-containing protein; Unnamed protein product; Highly similar to unknown protein YcfD of Escherichia coli. (373 aa)    
Predicted Functional Partners:
phoQ
Two-component sensor kinase PhoQ.
       0.637
gatY
Tagatose-bisphosphate aldolase GatY.
     
 0.560
phoP
Two-component response regulator PhoP.
       0.547
plu1125
Unnamed protein product; Similar to integrase/recombinase; Belongs to the 'phage' integrase family.
      
 0.539
ISPlu16B
Transposase, IS630 family.
      
 0.539
ISPlu16A
Transposase, IS630 family.
      
 0.539
plu3688
Unnamed protein product; Similar to integrase/recombinase.
      
 0.539
plu0801
Unnamed protein product; Similar to unknown protein.
      
 0.538
plu0838
PTS EIIA type-4 domain-containing protein; Unnamed protein product; Similar to putative PTS system IIA component YadI of Escherichia coli.
      
 0.538
plu1012
Unnamed protein product; Similar to unknown protein.
      
 0.538
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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