Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu2825HIT domain-containing protein; Unnamed protein product; Highly similar to histidine triad-like protein YcfF of Escherichia coli. (118 aa)    
Predicted Functional Partners:
glnA
Glutamine synthetase (glutamate--ammonia ligase).
   
   0.702
lpoB
Penicillin-binding protein activator LpoB; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b).
  
  
 0.693
plu2826
Unnamed protein product; Highly similar to putative deoxyribonuclease YcfH and to probable metal-dependent hydrolase.
     
 0.679
holB
DNA-directed DNA polymerase III delta' chain.
       0.675
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.631
thiK
Thiamine kinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
     
 0.616
mltG
Endolytic murein transglycosylase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
       0.593
plu3180
Unnamed protein product; Hypothetical secreted protein.
  
  
 0.585
udk
Uridine kinase (uridine monophosphokinase) (pyrimidine ribonucleoside kinase).
   
  0.539
plu1633
UPF0434 protein plu1633; Unnamed protein product; Highly similar to unknown protein YcaR of Escherichia coli; Belongs to the UPF0434 family.
  
    0.512
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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