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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbcBExodeoxyribonuclease I (exonuclease I) (DNA deoxyribophosphodiesterase). (476 aa)    
Predicted Functional Partners:
rdgC
Recombinaison associated protein; May be involved in recombination; Belongs to the RdgC family.
  
     0.605
recJ
Single-stranded-DNA-specific exonuclease RecJ.
  
 
 
 0.532
plu2846
HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with protein gp48 from phage N15.
       0.471
plu2845
Unnamed protein product; Some similarities with protein gp49 from phage N15.
       0.447
plu1039
Unnamed protein product; Highly similar to single-stranded DNA-binding protein SSB.
    
 
 0.426
ssb
Single-strand binding protein (SSB) (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
 
 0.426
recB
Exodeoxyribonuclease V beta chain; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repai [...]
 
   
 0.423
plu2838
Unnamed protein product; Highly similar to probable membrane protein YceD of Escherichia coli.
  
     0.401
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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