Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2849Unnamed protein product; Highly similar to putative amino acid/amine transport protein YeeF of Escherichia coli. (460 aa)    
Predicted Functional Partners:
plu1965
AA_permease domain-containing protein; Unnamed protein product; Highly similar to D-serine/D-alanine/glycine transporter CycA.
  
   
 0.541
plu3105
AA_permease domain-containing protein; Unnamed protein product; Similar to D-serine/D-alanine/glycine transporter.
  
   
 0.507
dld
D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.
       0.486
treC
Trehalose-6-phosphate hydrolase (alpha,alpha-phosphotrehalase).
    
 0.445
yifK
Highly similar to probable transport protein YifK of Escherichia coli.
  
   
 0.411
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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