Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2855HTH lysR-type domain-containing protein; Unnamed protein product; Highly similar to putative transcriptional regulator LysR-type YeiE of Escherichia coli; Belongs to the LysR transcriptional regulatory family. (287 aa)    
Predicted Functional Partners:
hcaR
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.757
plu2856
Unnamed protein product; Highly similar to putative membrane protein YeiH of Escherichia coli.
 
   
 0.695
plu0410
HTH lysR-type domain-containing protein; Unnamed protein product; Weakly similar to putative LysR-family trancsriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.582
lysP
Lysine-specific permease.
       0.490
plu2606
HTH lysR-type domain-containing protein; Unnamed protein product; Highly similar to LysR-family transcriptional regulatory YdhB of Escherichia coli.
  
   
 0.407
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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