Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2860Unnamed protein product; Highly similar to the tryptophan-specific transport protein. (419 aa)    
Predicted Functional Partners:
plu2859
Nudix hydrolase domain-containing protein; Unnamed protein product; Similar to putative Mut family protein; Belongs to the Nudix hydrolase family.
 
     0.615
menC
O-succinylbenzoate-CoA synthase (OSB synthase) (4-(2'-carboxyphenyl)-4-oxybutyric acid synthase); Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.605
plu2861
Unnamed protein product; Highly similar to putative elongation factor P (EF-P) YeiP of Escherichia coli.
       0.565
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
  
   
 0.538
plu1385
BOF domain-containing protein; Unnamed protein product; Similar to putative exported protein YgiW of Escherichia coli.
  
     0.538
sdaC
Serine transporter SdaC protein.
  
   
 0.490
tnaA
Tryptophanase (L-tryptophan indole-lyase) (TNase); Belongs to the beta-eliminating lyase family.
  
  
 0.468
plu3616
UPF0231 protein plu3616; Unnamed protein product; Similar to unknown protein YacL of Escherichia coli; Belongs to the UPF0231 family.
  
     0.440
plu2097
Unnamed protein product; Similar to unknown protein YecM of Escherichia coli.
  
     0.428
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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