Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sprLipoprotein spr precursor. (196 aa)    
Predicted Functional Partners:
prc
Tail-specific protease precursor (protease RE) (PRC protein); Belongs to the peptidase S41A family.
    
 
 0.773
nlpI
Lipoprotein NlpI precursor; May be involved in cell division.
    
 
 0.773
ftsX
Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.668
plu2790
Unnamed protein product; Similar to probable probable N-acetylmuramoyl-L-alanine amidase YbjR precursor of Escherichia coli.
  
  
 0.603
plu2861
Unnamed protein product; Highly similar to putative elongation factor P (EF-P) YeiP of Escherichia coli.
 
    0.553
mlc
Making large colonies protein.
     
 0.552
plu1950
Unnamed protein product; Similar to unknown protein of Photorhabdus.
     
 0.547
plu4229
MFS domain-containing protein; Unnamed protein product; Some similarities with multidrug-resistance protein. Putative transmembrane protein.
     
 0.544
plu1463
Collar domain-containing protein; Unnamed protein product; Weakly similar to DNA inversion product, tail fiber protein homolog from lambdoid prophage.
   
  
 0.543
gatY
Tagatose-bisphosphate aldolase GatY.
   
  
 0.540
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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