Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu2868Unnamed protein product; Highly similar to putative ATP-dependent helicase YejH of Escherichia coli. (585 aa)    
Predicted Functional Partners:
plu2870
Unnamed protein product; Highly similar to 37 kDa nucleoid-associated protein YejK of Escherichia coli.
  
   
 0.610
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.585
hepA
RNA polymerase associated protein (ATP-dependent helicase); Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
 
 
 0.579
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.574
rplY
Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
       0.553
rsuA
Ribosomal small subunit pseudouridine synthase A (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (uracil hydrolyase); Belongs to the pseudouridine synthase RsuA family.
 
     0.529
bcr
Bicyclonycin resistance protein (sulfonamide resistance protein).
 
     0.469
plu2872
Unnamed protein product; Highly similar unknown protein YejM of Escherichia coli.
  
     0.452
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.447
plu3487
Unnamed protein product; Similar to bacteriophage integrase; Belongs to the 'phage' integrase family.
   
    0.446
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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