Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2874Collar domain-containing protein; Unnamed protein product; Some similarities with tail fiber protein. (440 aa)    
Predicted Functional Partners:
plu2873
Unnamed protein product; Similar to bacteriophage tail fiber protein.
 
     0.930
plu2875
Unnamed protein product; Similar to putative bacteriophage protein.
       0.774
plu0019
Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.
  
    0.744
plu3327
Unnamed protein product; Similar to YcfA protein, phage protein-related.
  
    0.744
plu3024
Unnamed protein product; Similar to putative tail fiber protein from a lambdoid prophage.
  
     0.725
plu0033
Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.
  
     0.724
plu3497
Unnamed protein product; Some similarities with lambda tail fiber assembly protein G.
  
     0.723
plu3012
Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.
  
     0.722
plu2035
Unnamed protein product; Some similarities with putative tail fiber protein of prophage.
  
     0.719
plu3426
Unnamed protein product; Similar to tailspike and baseplate protein.
 
    0.683
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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