Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2916Prim_Zn_Ribbon domain-containing protein; Unnamed protein product; Some similarities with alpha replication protein of prophage. (318 aa)    
Predicted Functional Partners:
plu2917
Unnamed protein product; Similar to bacteriophage protein, putative DNA or RNA helicases.
 
   
 0.948
plu0802
HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative TetR-family regulatory protein.
  
     0.757
plu4899
Sulfatase domain-containing protein; Unnamed protein product; Similar to putative membrane protein.
  
     0.685
plu2915
Unnamed protein product; Hypothetical gene.
       0.613
plu0136
DUF4942 domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.595
plu4515
Unnamed protein product; Similar to permease protein of ABC transport system.
  
     0.591
plu2045
Unnamed protein product; Similar to unknown protein.
  
     0.589
plu4514
Unnamed protein product; Similar to permease protein of ABC transport system.
  
     0.585
plu0817
Unnamed protein product; Weakly similar to unknown protein.
  
     0.581
plu2918
RepL domain-containing protein; Unnamed protein product; Hypothetical gene.
       0.581
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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