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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2936YqaJ domain-containing protein; Unnamed protein product; Similar to bacteriophage exonuclease. (227 aa)    
Predicted Functional Partners:
plu2935
Unnamed protein product; Some similarities with bacteriophage recombination protein.
 
 
   0.899
plu0203
Unnamed protein product; Some similarities with putative transport protein.
  
     0.749
plu0010
Unnamed protein product; Similar to protein U (gpU) of Enterobacteria phage P2.
   
    0.724
plu0013
Unnamed protein product; Similar to protein E (gpE) of Enterobacteria phage P2.
   
    0.724
plu3296
Resolvase/invertase-type recombinase catalytic domain-containing protein; Unnamed protein product; Highly similar to Transposon Tn2501 resolvase.
  
    0.677
plu0026
Unnamed protein product; Highly similar to tail protein.
   
    0.671
plu2894
Unnamed protein product; Similar to unknown protein.
  
    0.659
plu3414
Lysozyme; Unnamed protein product; Similar to endolysin (lysozyme, muramidase, protein GP54). Putative secreted protein.
  
    0.642
plu3439
Unnamed protein product; Similar to G protein (gp31) of Enterobacteria phage Mu.
  
    0.641
plu1033
DksA C4-type domain-containing protein; Unnamed protein product; Weakly similar to unknown protein.
  
    0.628
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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