cbiB protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cbiB

CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (319 aa)

Predicted Functional Partners:

cobU

0.994

cbiP

0.991

cobD

0.981

cbiA

0.981

cbiC

0.979

cbiD

0.975

cbiE

0.967

cbiT

0.965

cbiJ

0.964

cbiH

0.964

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cbiA	cbiB	plu2999	plu2998	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	0.981
cbiA	cbiC	plu2999	plu2997	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Precorrin-8X methylmutase (Precorrin isomerase).	0.998
cbiA	cbiD	plu2999	plu2996	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.	0.973
cbiA	cbiE	plu2999	plu2995	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Cobalt-precorrin-7 (C5)-methyltransferase; Precorrin-6Y C5,15-methyltransferase [decarboxylating](precorrin-6 methyltransferase)(precorrin-6Y methylase).	0.966
cbiA	cbiH	plu2999	plu2991	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Precorrin-3B C17-methyltransferase (precorrin-3 methyltransferase) (precorrin-3 methylase).	0.970
cbiA	cbiJ	plu2999	plu2990	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Precorrin-6X reductase.	0.967
cbiA	cbiP	plu2999	plu2987	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.	0.978
cbiA	cbiT	plu2999	plu2994	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Precorrin-8W decarboxylase.	0.983
cbiA	cobD	plu2999	plu2967	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Aminotransferase CobD.	0.970
cbiA	cobU	plu2999	plu2986	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Bifunctional cobalamin biosynthesis protein cobU [Includes: Cobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	0.947
cbiB	cbiA	plu2998	plu2999	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	0.981
cbiB	cbiC	plu2998	plu2997	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Precorrin-8X methylmutase (Precorrin isomerase).	0.979
cbiB	cbiD	plu2998	plu2996	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.	0.975
cbiB	cbiE	plu2998	plu2995	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Cobalt-precorrin-7 (C5)-methyltransferase; Precorrin-6Y C5,15-methyltransferase [decarboxylating](precorrin-6 methyltransferase)(precorrin-6Y methylase).	0.967
cbiB	cbiH	plu2998	plu2991	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Precorrin-3B C17-methyltransferase (precorrin-3 methyltransferase) (precorrin-3 methylase).	0.964
cbiB	cbiJ	plu2998	plu2990	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Precorrin-6X reductase.	0.964
cbiB	cbiP	plu2998	plu2987	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.	0.991
cbiB	cbiT	plu2998	plu2994	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Precorrin-8W decarboxylase.	0.965
cbiB	cobD	plu2998	plu2967	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Aminotransferase CobD.	0.981
cbiB	cobU	plu2998	plu2986	CbiB protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	Bifunctional cobalamin biosynthesis protein cobU [Includes: Cobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	0.994

page 1 of 6

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About