Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3001Uncharacterized protein; Truncated gene. Some similarities with unknown protein YnfI precursor of Escherichia coli. (508 aa)    
Predicted Functional Partners:
plu4187
Unnamed protein product; Some similarities with cyclase/dehydrase/aromatase.
  
     0.762
plu3528
TauD domain-containing protein; Unnamed protein product; Some similarities with putative oxygenase and clavaminate synthase 1.
  
     0.742
plu0159
FA_desaturase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
     0.707
plu2352
Chitin-binding type-4 domain-containing protein; Unnamed protein product; Similar to chitinase and chitin binding protein precursor.
  
  
 0.684
plu0297
Cyclo(L-leucyl-L-leucyl) synthase; It uses activated amino acids in the form of aminoacyl-tRNAs (aa-tRNAs) as substrates to catalyze the ATP-independent formation of cyclodipeptides which are intermediates in diketopiperazine (DKP) biosynthetic pathways. Catalyzes the formation of cyclo(L-Leu-L-Leu) (cLL) from L-leucyl-tRNA(Leu). Can incorporate various nonpolar residues, such as L-phenylalanine, L-leucine and L-methionine, into cyclodipeptides; Belongs to the CDPS family.
  
     0.589
plu1218
ATP-grasp domain-containing protein; Unnamed protein product; Some similarities with putative ligase/carboxylase.
  
     0.461
plu0737
Unnamed protein product; Similar to unknown protein.
  
     0.457
plu0736
Unnamed protein product; Weakly similar to hypothetical proteins.
  
     0.454
plu4884
Unnamed protein product; Some similarities with putative transferase enzyme.
  
     0.454
plu0735
Unnamed protein product; Similar to unknown protein.
  
     0.452
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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