plu3002 protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

plu3002

Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1. (92 aa)

Predicted Functional Partners:

plu0865

0.808

plu2085

0.803

plu3003

0.799

plu4788

0.791

plu1812

0.710

plu2984

0.585

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
plu0865	plu2984	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to virulence-associated protein and proteic killer active protein.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.	0.773
plu0865	plu3002	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to virulence-associated protein and proteic killer active protein.	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	0.808
plu1812	plu2085	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YbaQ of Escherichia coli.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.	0.774
plu1812	plu3002	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YbaQ of Escherichia coli.	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	0.710
plu1812	plu4788	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YbaQ of Escherichia coli.	HTH cro/C1-type domain-containing protein; Truncated gene. Similar to the C-terminal region of proteic killer suppression protein HigA.	0.774
plu2085	plu1812	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YbaQ of Escherichia coli.	0.774
plu2085	plu2984	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.	0.771
plu2085	plu3002	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	0.803
plu2984	plu0865	HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to virulence-associated protein and proteic killer active protein.	0.773
plu2984	plu2085	HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.	0.771
plu2984	plu3002	HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	0.585
plu2984	plu3003	HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.	0.772
plu2984	plu4788	HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.	HTH cro/C1-type domain-containing protein; Truncated gene. Similar to the C-terminal region of proteic killer suppression protein HigA.	0.771
plu3002	plu0865	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to virulence-associated protein and proteic killer active protein.	0.808
plu3002	plu1812	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YbaQ of Escherichia coli.	0.710
plu3002	plu2085	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.	0.803
plu3002	plu2984	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.	0.585
plu3002	plu3003	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.	0.799
plu3002	plu4788	Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.	HTH cro/C1-type domain-containing protein; Truncated gene. Similar to the C-terminal region of proteic killer suppression protein HigA.	0.791
plu3003	plu2984	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.	0.772

page 1 of 2

Server load: low (38%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Fusion

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About