plu3013 protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

plu3013

Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage. (233 aa)

Predicted Functional Partners:

plu3012

0.902

plu0019

0.781

plu3327

0.781

plu0033

0.764

plu3024

0.764

plu3497

0.764

plu2035

0.763

plu2873

0.760

plu3426

0.658

plu3431

0.640

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
plu0019	plu3013	Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.781
plu0019	plu3431	Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Highly similar to tail core protein.	0.416
plu0033	plu3013	Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.764
plu2035	plu3013	Unnamed protein product; Some similarities with putative tail fiber protein of prophage.	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.763
plu2873	plu3013	Unnamed protein product; Similar to bacteriophage tail fiber protein.	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.760
plu3012	plu3013	Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.902
plu3013	plu0019	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.781
plu3013	plu0033	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.764
plu3013	plu2035	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Some similarities with putative tail fiber protein of prophage.	0.763
plu3013	plu2873	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Similar to bacteriophage tail fiber protein.	0.760
plu3013	plu3012	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.902
plu3013	plu3024	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Similar to putative tail fiber protein from a lambdoid prophage.	0.764
plu3013	plu3327	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Similar to YcfA protein, phage protein-related.	0.781
plu3013	plu3426	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Similar to tailspike and baseplate protein.	0.658
plu3013	plu3431	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Highly similar to tail core protein.	0.640
plu3013	plu3497	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	Unnamed protein product; Some similarities with lambda tail fiber assembly protein G.	0.764
plu3024	plu3013	Unnamed protein product; Similar to putative tail fiber protein from a lambdoid prophage.	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.764
plu3327	plu3013	Unnamed protein product; Similar to YcfA protein, phage protein-related.	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.781
plu3327	plu3431	Unnamed protein product; Similar to YcfA protein, phage protein-related.	Unnamed protein product; Highly similar to tail core protein.	0.418
plu3426	plu3013	Unnamed protein product; Similar to tailspike and baseplate protein.	Collar domain-containing protein; Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage.	0.658

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About