Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3019Unnamed protein product; Some similarities with glycosyltransferase. (251 aa)    
Predicted Functional Partners:
plu0447
Unnamed protein product; Some similarities with unknown protein.
  
     0.623
plu0158
Unnamed protein product; Similar to L-arginine:lysine amidinotransferase and similar to L-arginine:glycine amidinotransferase.
  
     0.513
plu3018
Glyco_trans_2-like domain-containing protein; Unnamed protein product; Similar to putative galactosyl transferase or beta-glucosyltransferase.
     
 0.493
ppxA
Photopexin A.
  
     0.492
plu3020
Unnamed protein product; Hypothetical protein.
  
    0.488
plu3529
Asp_Arg_Hydrox domain-containing protein; Unnamed protein product; Similar to aspartyl (asparaginyl) beta hydroxylase.
  
     0.480
plu3560
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown glycine-rich protein.
  
     0.409
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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