Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3020Unnamed protein product; Hypothetical protein. (256 aa)    
Predicted Functional Partners:
arcB
Aerobic respiration control sensor protein.
  
 
 0.596
plu3916
Unnamed protein product; Similar to creatininase (creatinine amidohydrolase).
  
  
 0.505
plu2797
Unnamed protein product; Hypothetical protein.
  
 
 0.495
plu3019
Unnamed protein product; Some similarities with glycosyltransferase.
  
    0.488
plu3275
SseB_C domain-containing protein; Unnamed protein product; Some similarities with rhodanese-like protein SseB of Escherichia coli.
  
 
 0.485
bvgS
Virulence sensor protein BvgS precursor.
  
 
 0.447
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 
 0.429
plu1030
AAA_31 domain-containing protein; Unnamed protein product; Similar to chromosome partitioning related protein SOJ-like protein.
  
 
 0.426
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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