Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3032Unnamed protein product; Some similarities with unknown protein of Photorhabdus. (201 aa)    
Predicted Functional Partners:
plu3031
Unnamed protein product; Similar to unknown bacteriophage protein.
       0.837
plu3033
Unnamed protein product; Some similarities with unknown bacteriophage protein.
       0.812
plu3030
Unnamed protein product; Similar to unknown bacteriophage protein.
       0.585
plu3029
Gp138_N domain-containing protein; Unnamed protein product; Similar to unknown bacteriophage protein.
       0.580
plu3026
Unnamed protein product; Similar to unknown bacteriophage protein.
       0.579
plu3028
Unnamed protein product; Similar to unknown bacteriophage protein.
       0.579
plu3027
Baseplate_J domain-containing protein; Unnamed protein product; Similar to unknown bacteriophage protein.
       0.563
plu3025
Collar domain-containing protein; Unnamed protein product; Similar to Sc/SvQ protein of Escherichia coli plasmid p15B.
       0.552
plu3024
Unnamed protein product; Similar to putative tail fiber protein from a lambdoid prophage.
       0.548
plu3034
Unnamed protein product; Similar to unknown bacteriophage protein.
       0.496
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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