STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu3130Unnamed protein product; Similar to different toxins like syringomycin synthetase and gramicidin S synthase 2. (3311 aa)    
Predicted Functional Partners:
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
 
0.986
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
0.985
plu1216
MbtH domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
 
 
 0.980
plu1218
ATP-grasp domain-containing protein; Unnamed protein product; Some similarities with putative ligase/carboxylase.
 
 
 0.979
plu1878
Carrier domain-containing protein; Unnamed protein product; Similar to antibiotic synthetase.
 
 
0.967
plu3923
Condensation domain-containing protein; Unnamed protein product; Weakly similar to synthetases (pyoverdine synthetase B, actinomycin synthetase II AcmB, mycosubtilin synthetase chain MycB...).
 
  
 0.962
plu2324
Unnamed protein product; N-terminal region highly similar Irp5 protein and C-terminal region similar to Irp9 protein of Yersinia enterocolitica.
 
  
0.949
plu1212
Carrier domain-containing protein; Unnamed protein product; Some similarities with polyketide synthase PksC and mycosubtilin synthetase chain MycA. Putative transmembrane protein.
 
 0.926
entB
Isochorismatase (2,3-dihydro-2,3-dihydroxybenzoate synthetase).
 
  
 0.920
plu2320
Unnamed protein product; Similar to HMWP2 protein of Yersinia enterocolitica.
 
  
0.917
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.