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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu3217Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA. (3528 aa)    
Predicted Functional Partners:
rtxC
Cytolysin-activating lysine-acyltransferase RtxC.
  
     0.769
plu3514
TPR_REGION domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
    0.681
plu3513
Unnamed protein product; Some similarities with heme receptor HasR.
  
     0.679
plu0634
Unnamed protein product; Similar to toxin secretion ATP-binding protein.
  
   
 0.660
plu4117
Unnamed protein product; Similar to unknown protein of Photorhabdus and some similarities with Fe-regulated RTX cytotoxin and hemolysin-type calcium binding protein.
  
   
 0.595
plu3126
Unnamed protein product; Similar to toxin secretion transporter (Membrane Fusion Protein (MFP)).
  
     0.587
plu3668
Unnamed protein product; Similar to unknown protein of Photorhabdus and some similarities with Fe-regulated RTX cytotoxin.
  
   
 0.573
rtxD
RTX toxin ABC transporter protein (MFP) RtxD.
  
     0.572
plu4511
Unnamed protein product; Some similarities with the N-terminal region of phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.570
plu3127
Unnamed protein product; Similar to toxin secretion transporter.
  
     0.566
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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