Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3220HTH luxR-type domain-containing protein; Unnamed protein product; Similar to probable transcription regulator, LuxR family. (228 aa)    
Predicted Functional Partners:
arcB
Aerobic respiration control sensor protein.
 
 
 
 0.749
plu3219
Unnamed protein product; Similar to probable transcription regulator, LuxR family.
   
  
0.695
barA
Sensor protein BarA.
   
 
 0.582
plu1483
RES domain-containing protein; Unnamed protein product; Hypothetical gene.
  
     0.571
plu1482
DUF2384 domain-containing protein; Unnamed protein product; Hypothetical gene.
  
 
   0.541
plu3801
TauD domain-containing protein; Unnamed protein product; Weakly similar to putative oxygenase.
  
     0.525
plu3383
Unnamed protein product; Similar to unknown protein of Photorhabdus.
  
     0.499
bvgS
Virulence sensor protein BvgS precursor.
   
 
 0.493
plu3384
Baseplate_J domain-containing protein; Unnamed protein product; Weakly similar to unknown bacteriophage protein.
  
     0.488
plu3647
Unnamed protein product; Similar to unknown protein.
  
     0.469
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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