Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3255OmpA-like domain-containing protein; Unnamed protein product; Similar to putative exported protein. (575 aa)    
Predicted Functional Partners:
plu3254
Unnamed protein product; Highly similar to Hcp protein.
 
     0.925
plu3253
Unnamed protein product; Similar to vgrG related protein.
 
   
 0.811
plu3247
Unnamed protein product; Similar to putative membrane protein of Y. pestis.
 
     0.779
plu3231
Unnamed protein product; Similar to putative membrane protein of Y. pestis.
 
   
 0.748
plu4214
Unnamed protein product; Similar to putative membrane protein of Y. pestis.
 
   
 0.745
plu3238
Unnamed protein product; Similar to putative membrane protein of Y. pestis.
 
     0.738
plu4203
ImpA_N domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.736
plu4199
GPW_gp25 domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
   
 0.723
plu3223
Unnamed protein product; Weakly similar to unknown protein. Putative secreted protein.
  
   
 0.722
plu3222
GPW_gp25 domain-containing protein; Unnamed protein product; Some similarities with hypothetical protein.
  
   
 0.711
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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