Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3312Unnamed protein product; Similar to putative alpha helix protein YfhG of Escherichia coli. (251 aa)    
Predicted Functional Partners:
plu3313
Unnamed protein product; Highly similar to putative sensor-like histidine kinase (two-component sensor protein kinase) YfhK of Escherichia coli.
 
 
 
 0.941
plu3311
Unnamed protein product; Highly similar to putative 2-component transcriptional regulator YfhA of Escherichia coli.
     
 0.860
flgM
Negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM.
  
     0.770
wzzE
Lipopolysaccharide biosynthesis protein WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.766
plu2865
Unnamed protein product; Similar to unknown protein yejG of Escherichia coli.
  
     0.753
plu4770
Unnamed protein product; Similar to putative membrane protein YiiR of Escherichia coli.
  
     0.750
plu3275
SseB_C domain-containing protein; Unnamed protein product; Some similarities with rhodanese-like protein SseB of Escherichia coli.
  
     0.742
panZ
PanD regulatory factor; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
  
     0.742
uspB
Universal stress protein B.
  
     0.732
plu4140
Unnamed protein product; Similar to putative TetR-family regulatory protein YjdC of Escherichia coli.
  
     0.727
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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