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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu3313Unnamed protein product; Highly similar to putative sensor-like histidine kinase (two-component sensor protein kinase) YfhK of Escherichia coli. (498 aa)    
Predicted Functional Partners:
plu3311
Unnamed protein product; Highly similar to putative 2-component transcriptional regulator YfhA of Escherichia coli.
 
 
 0.987
arcB
Aerobic respiration control sensor protein.
 
 
0.906
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.904
pspC
Phage shock protein C.
  
   0.718
plu3312
Unnamed protein product; Similar to putative alpha helix protein YfhG of Escherichia coli.
 
   
 0.716
barA
Sensor protein BarA.
 
 
0.711
bvgS
Virulence sensor protein BvgS precursor.
 
 
 
0.691
phoB
Phosphate regulon transcriptional regulatory protein.
 
 
 0.678
rof
Rof protein.
  
     0.675
rcsD
Phosphotransferase RcsD; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
 
 
 0.668
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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